Titre
BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics.
Type
recension de livre
Institution
UNIL/CHUV/Unisanté + institutions partenaires
Périodique
Auteur(s)
Waterhouse, R.M.
Auteure/Auteur
Seppey, M.
Auteure/Auteur
Simão, F.A.
Auteure/Auteur
Manni, M.
Auteure/Auteur
Ioannidis, P.
Auteure/Auteur
Klioutchnikov, G.
Auteure/Auteur
Kriventseva, E.V.
Auteure/Auteur
Zdobnov, E.M.
Auteure/Auteur
Liens vers les personnes
Liens vers les unités
ISSN
1537-1719
Statut éditorial
Publié
Date de publication
2018-03-01
Volume
35
Numéro
3
Première page
543
Dernière page/numéro d’article
548
Peer-reviewed
Oui
Langue
anglais
Notes
Publication types: Journal Article
Publication Status: ppublish
Publication Status: ppublish
Résumé
Genomics promises comprehensive surveying of genomes and metagenomes, but rapidly changing technologies and expanding data volumes make evaluation of completeness a challenging task. Technical sequencing quality metrics can be complemented by quantifying completeness of genomic data sets in terms of the expected gene content of Benchmarking Universal Single-Copy Orthologs (BUSCO, http://busco.ezlab.org). The latest software release implements a complete refactoring of the code to make it more flexible and extendable to facilitate high-throughput assessments. The original six lineage assessment data sets have been updated with improved species sampling, 34 new subsets have been built for vertebrates, arthropods, fungi, and prokaryotes that greatly enhance resolution, and data sets are now also available for nematodes, protists, and plants. Here, we present BUSCO v3 with example analyses that highlight the wide-ranging utility of BUSCO assessments, which extend beyond quality control of genomics data sets to applications in comparative genomics analyses, gene predictor training, metagenomics, and phylogenomics.
PID Serval
serval:BIB_2A4C7F8DA305
PMID
Open Access
Oui
Date de création
2017-12-16T17:38:40.985Z
Date de création dans IRIS
2025-05-20T20:08:07Z
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Nom
msx319.pdf
Version du manuscrit
published
Taille
989.04 KB
Format
Adobe PDF
PID Serval
serval:BIB_2A4C7F8DA305.P001
URN
urn:nbn:ch:serval-BIB_2A4C7F8DA3051
Somme de contrôle
(MD5):926868ed8d31248d4f533b2dfd1d8483